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| GDT | A Generalized Family-Based Association Test(GDT) for Dicotomous Traits |
| GDTI | Generalized Disequilibrium Test for Association in Qualitative Traits Incorporating Imprinting Effects Based on Complete Extended Pedigrees |
| GDTI.mc | Monte Carlo Generalized Disequilibrium Test for Association in Qualitative Traits Incorporating Imprinting Effects |
| GDT_ME | Generalized Disequilibrium Test with the Moment Estimate of the Variance (GDT-ME) for Association in Dichotomous Traits |
| makeped | The makeped program |
| MCGDTI | Monte Carlo Generalized Disequilibrium Test for Association in Qualitative Traits Incorporating Imprinting Effects Based on Extended Pedigrees |
| MCGDT_ME | Generalized Disequilibrium Test with the Moment Estimate of the Variance for Association in Dichotomous Traits by Using Monte Carlo Sampling and Scheme |
| MC_GDT | A Generalized Family-Based Association Test for Dicotomous Traits by using Monte Carlo sampling and scheme |
| MC_GDTI | Generalized Disequilibrium Test for Association in Qualitative Traits Incorporating Imprinting Effects Based on Incomplete pedigrees |
| ped | A Standard Linkage Pedigree File |
| pedig | Divide the pedigree dataset into several parts |
| PPAT | Pedigree parental-asymmetry test |
| PPAT.mc | Monte Carlo Pedigree Parental-Asymmetry Test (MCPPAT) for Genomic Imprinting Effects in Qualitative Traits |
| slink | A general simulation program for linkage analysis |