$block.name [1] "block1" $`Convergence process of likelihood function under EM algorithm` [,1] [,2] [1,] 0 -1427.1900 [2,] 1 -851.6545 [3,] 2 -836.4604 [4,] 3 -832.1217 [5,] 4 -831.0758 [6,] 5 -830.8148 [7,] 6 -830.7326 [8,] 7 -830.7009 [9,] 8 -830.6876 [10,] 9 -830.6819 [11,] 10 -830.6794 [12,] 11 -830.6784 [13,] 12 -830.6780 [14,] 13 -830.6778 [15,] 14 -830.6777 [16,] 15 -830.6777 [17,] 16 -830.6777 [18,] 17 -830.6777 [19,] 18 -830.6776 [20,] 19 -830.6776 [21,] 20 -830.6776 [22,] 21 -830.6776 [23,] 22 -830.6776 [24,] 23 -830.6776 [25,] 24 -830.6776 [26,] 25 -830.6776 $`Haplotype frequency estimates under EM algorithm` Haplotype Frequency 1 222 0.001920744 2 122 0.064634843 3 212 0.006137010 4 112 0.019807403 5 221 0.521474919 6 121 0.264469494 7 211 0.006717327 8 111 0.114838260 $`Convergence process of likelihood function under ECM algorithm` [,1] [,2] [1,] 0 -1427.1900 [2,] 1 -1086.0470 [3,] 2 -876.1234 [4,] 3 -832.8174 [5,] 4 -827.3226 [6,] 5 -826.7852 [7,] 6 -826.6036 [8,] 7 -826.4974 [9,] 8 -826.4367 [10,] 9 -826.4042 [11,] 10 -826.3875 [12,] 11 -826.3792 [13,] 12 -826.3752 [14,] 13 -826.3733 [15,] 14 -826.3724 [16,] 15 -826.3719 [17,] 16 -826.3717 [18,] 17 -826.3716 [19,] 18 -826.3716 [20,] 19 -826.3716 [21,] 20 -826.3716 [22,] 21 -826.3716 [23,] 22 -826.3716 [24,] 23 -826.3716 [25,] 24 -826.3716 [26,] 25 -826.3716 [27,] 26 -826.3716 [28,] 27 -826.3716 [29,] 28 -826.3716 [30,] 29 -826.3716 [31,] 30 -826.3716 $`Haplotype frequency estimates under ECM algorithm` Haplotype Frequency 1 222 0.002353933 2 122 0.072071972 3 212 0.007245692 4 112 0.021580102 5 221 0.492392741 6 121 0.271485150 7 211 0.008277268 8 111 0.124593143 $K [1] 1.421679 $`LRT statistic based on Niu's Model` [1] 8.612174 $`P value of LRT based on Niu's Model` [1] 0.003339234 $`Convergence process of likelihood function under IEM algorithm` [,1] [,2] [1,] 0 -1418.1551 [2,] 1 -848.9874 [3,] 2 -834.0246 [4,] 3 -829.5090 [5,] 4 -828.3085 [6,] 5 -827.9390 [7,] 6 -827.7727 [8,] 7 -827.6740 [9,] 8 -827.6080 [10,] 9 -827.5616 [11,] 10 -827.5280 [12,] 11 -827.5035 [13,] 12 -827.4855 [14,] 13 -827.4722 [15,] 14 -827.4626 [16,] 15 -827.4555 [17,] 16 -827.4504 [18,] 17 -827.4467 [19,] 18 -827.4440 [20,] 19 -827.4421 [21,] 20 -827.4408 [22,] 21 -827.4398 [23,] 22 -827.4391 [24,] 23 -827.4386 [25,] 24 -827.4382 [26,] 25 -827.4380 [27,] 26 -827.4378 [28,] 27 -827.4377 [29,] 28 -827.4376 [30,] 29 -827.4375 [31,] 30 -827.4375 [32,] 31 -827.4375 [33,] 32 -827.4374 [34,] 33 -827.4374 [35,] 34 -827.4374 [36,] 35 -827.4374 [37,] 36 -827.4374 [38,] 37 -827.4374 [39,] 38 -827.4374 [40,] 39 -827.4374 [41,] 40 -827.4374 [42,] 41 -827.4374 [43,] 42 -827.4374 [44,] 43 -827.4374 [45,] 44 -827.4374 [46,] 45 -827.4374 [47,] 46 -827.4374 [48,] 47 -827.4374 [49,] 48 -827.4374 [50,] 49 -827.4374 [51,] 50 -827.4374 [52,] 51 -827.4374 [53,] 52 -827.4374 [54,] 53 -827.4374 [55,] 54 -827.4374 $`Haplotype frequency estimates under IEM algorithm` Haplotype Frequency 1 222 0.002035083 2 122 0.063152834 3 212 0.006230458 4 112 0.021052216 5 221 0.520572475 6 121 0.264169929 7 211 0.007137827 8 111 0.115649177 $rho [1] 0.07567665 $`LRT statistic based on Inbreeding Model` [1] 6.480511 $`P value of LRT based on Inbreeding Model` [1] 0.01090636 $block.name [1] "block2" $`Convergence process of likelihood function under EM algorithm` [,1] [,2] [1,] 0 -866.4340 [2,] 1 -801.0168 [3,] 2 -800.9221 [4,] 3 -800.9041 [5,] 4 -800.9007 [6,] 5 -800.9001 [7,] 6 -800.8999 [8,] 7 -800.8999 [9,] 8 -800.8999 [10,] 9 -800.8999 [11,] 10 -800.8999 [12,] 11 -800.8999 [13,] 12 -800.8999 $`Haplotype frequency estimates under EM algorithm` Haplotype Frequency 1 22 0.3991834 2 12 0.2495666 3 21 0.2345666 4 11 0.1166834 $`Convergence process of likelihood function under ECM algorithm` [,1] [,2] [1,] 0 -866.4340 [2,] 1 -812.5093 [3,] 2 -802.6233 [4,] 3 -801.0581 [5,] 4 -800.6936 [6,] 5 -800.6101 [7,] 6 -800.5916 [8,] 7 -800.5876 [9,] 8 -800.5867 [10,] 9 -800.5865 [11,] 10 -800.5865 [12,] 11 -800.5865 [13,] 12 -800.5865 [14,] 13 -800.5865 [15,] 14 -800.5865 [16,] 15 -800.5865 [17,] 16 -800.5865 $`Haplotype frequency estimates under ECM algorithm` Haplotype Frequency 1 22 0.3952090 2 12 0.2505391 3 21 0.2358070 4 11 0.1184449 $K [1] 1.094599 $`LRT statistic based on Niu's Model` [1] 0.6268451 $`P value of LRT based on Niu's Model` [1] 0.4285149 $`Convergence process of likelihood function under IEM algorithm` [,1] [,2] [1,] 0 -865.5822 [2,] 1 -800.6397 [3,] 2 -800.5261 [4,] 3 -800.4908 [5,] 4 -800.4711 [6,] 5 -800.4549 [7,] 6 -800.4398 [8,] 7 -800.4256 [9,] 8 -800.4121 [10,] 9 -800.3994 [11,] 10 -800.3875 [12,] 11 -800.3764 [13,] 12 -800.3662 [14,] 13 -800.3568 [15,] 14 -800.3482 [16,] 15 -800.3403 [17,] 16 -800.3333 [18,] 17 -800.3269 [19,] 18 -800.3213 [20,] 19 -800.3162 [21,] 20 -800.3117 [22,] 21 -800.3078 [23,] 22 -800.3043 [24,] 23 -800.3013 [25,] 24 -800.2987 [26,] 25 -800.2964 [27,] 26 -800.2944 [28,] 27 -800.2927 [29,] 28 -800.2912 [30,] 29 -800.2900 [31,] 30 -800.2889 [32,] 31 -800.2880 [33,] 32 -800.2872 [34,] 33 -800.2865 [35,] 34 -800.2859 [36,] 35 -800.2855 [37,] 36 -800.2851 [38,] 37 -800.2847 [39,] 38 -800.2844 [40,] 39 -800.2842 [41,] 40 -800.2840 [42,] 41 -800.2838 [43,] 42 -800.2836 [44,] 43 -800.2835 [45,] 44 -800.2834 [46,] 45 -800.2833 [47,] 46 -800.2833 [48,] 47 -800.2832 [49,] 48 -800.2832 [50,] 49 -800.2831 [51,] 50 -800.2831 [52,] 51 -800.2831 [53,] 52 -800.2830 [54,] 53 -800.2830 [55,] 54 -800.2830 [56,] 55 -800.2830 [57,] 56 -800.2830 [58,] 57 -800.2830 [59,] 58 -800.2829 [60,] 59 -800.2829 [61,] 60 -800.2829 [62,] 61 -800.2829 [63,] 62 -800.2829 [64,] 63 -800.2829 [65,] 64 -800.2829 [66,] 65 -800.2829 [67,] 66 -800.2829 [68,] 67 -800.2829 [69,] 68 -800.2829 [70,] 69 -800.2829 [71,] 70 -800.2829 [72,] 71 -800.2829 [73,] 72 -800.2829 [74,] 73 -800.2829 [75,] 74 -800.2829 [76,] 75 -800.2829 [77,] 76 -800.2829 [78,] 77 -800.2829 [79,] 78 -800.2829 [80,] 79 -800.2829 [81,] 80 -800.2829 [82,] 81 -800.2829 [83,] 82 -800.2829 [84,] 83 -800.2829 [85,] 84 -800.2829 [86,] 85 -800.2829 [87,] 86 -800.2829 [88,] 87 -800.2829 [89,] 88 -800.2829 [90,] 89 -800.2829 [91,] 90 -800.2829 [92,] 91 -800.2829 [93,] 92 -800.2829 [94,] 93 -800.2829 [95,] 94 -800.2829 [96,] 95 -800.2829 $`Haplotype frequency estimates under IEM algorithm` Haplotype Frequency 1 22 0.3993503 2 12 0.2500214 3 21 0.2344054 4 11 0.1162229 $rho [1] 0.03191887 $`LRT statistic based on Inbreeding Model` [1] 1.234031 $`P value of LRT based on Inbreeding Model` [1] 0.2666245